Personally, except for recognising V/Y perms and which AUF to do E perms, I've had no problem with my way. I guess either can work, just like intuitive and algorithmic F2L. However, I think that if you don't know full 2-sided recog, as if you were halfway through what you're learning, you have the disadvantage of having to check to see if it's a case you know first, and then if you don't know it having to then do 'normal' recognition, slowing you down. But yes, once you've fully learned either method I can't see why one method should have the advantage.