I'm not sure how to word this.
Basically, I'm going to try this in FMC. I will do petrus F2L. Then, COLL. So I'll end up with a Z, H, or U perm. These algorithms aren't very short. 3 cycle is U perm. 2-cycle is H or Z.
In FMC, I would get to this step, see which pieces need to be switched. Undo all the moves until I get to near the beginning, where I can swap the edges using a shorter alg.
I'm rather inexperienced with this, so I'm not sure what to do here actually. I'm not sure when it will be a good opportunity to do this, but I assume it should be right after you orient the edges. When, the position is good, apply the alg, finish F2L and COLL, and end up with a PLL skip.